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| Archived
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Chapter_2-Data_Prep\5. Let's start! Loading packages and files.mp4
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Chapter_2-Data_Prep\6. Data preparation.mp4
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Chapter_2-Data_Prep\7. Model matrix and expression check.mp4
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Chapter_2-Data_Prep\8. Count filtering and normalization.mp4
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Chapter_2-Data_Prep\9. Exploratory data analysis.mp4
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Chapter_2-Data_Prep\Files\GSE205748_boxplots.pdf |
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Chapter_2-Data_Prep\Files\PCA_GSE205748.pdf |
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Chapter_3-Differential_expression_Analysis\10. Differential expression analysis.mp4
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Chapter_3-Differential_expression_Analysis\11. Annotation of results.mp4
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Chapter_3-Differential_expression_Analysis\Files\DE_Results_GSE205748_FDR_0_05_logFC0_58.xlsx |
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Chapter_3-Differential_expression_Analysis\Files\GSE205748_DE_results_PsA_les_vs_healthy.xlsx |
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Chapter_4-Visualization_of_Results_and_Reproducility\12. Results Visualization (Part 1) Volcano Plot.mp4
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Chapter_4-Visualization_of_Results_and_Reproducility\13. Results Visualization (Part 2) Heatmap.mp4
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Chapter_4-Visualization_of_Results_and_Reproducility\14. Ensuring reproducibility.mp4
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Chapter_4-Visualization_of_Results_and_Reproducility\Files\GSE205748_heatmap_top100_DE.pdf |
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Chapter_4-Visualization_of_Results_and_Reproducility\Files\session_info_GSE205748_DE_analysis_complete.txt |
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Chapter_4-Visualization_of_Results_and_Reproducility\Files\VolcanoPlot_GSE205748.pdf |
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Chapter_5-Closing\15. Closing remarks.mp4
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Chapter_5-Closing\Files\2023-10-26_GSE205748_DE_analysis_complete.RData |
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Chapter_1-Introduction\1. Introduction.mp4
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Chapter_1-Introduction\2. R studio.mp4
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Chapter_1-Introduction\3. Refreshing basic R commands.mp4
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Chapter_1-Introduction\4. Installing the packages.mp4
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Chapter_1-Introduction\Files\dea_edgeR_script.R |
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